Type: Package
Package: OlinkAnalyzeVignettes
Title: Vignettes for Analyzing Data using 'OlinkAnalyze'
Version: 1.1.0
Authors@R: c(
    person("Kathleen", "Nevola", , "biostattools@olink.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-5183-6444", "kathy-nevola")),
    person("Marianne", "Sandin", role = "aut",
           comment = c(ORCID = "0000-0001-6186-963X", "marisand")),
    person("Jamey", "Guess", role = "aut",
           comment = c(ORCID = "0000-0002-4017-0923", "jrguess")),
    person("Simon", "Forsberg", role = "aut",
           comment = c(ORCID = "0000-0002-7451-9222", "simfor")),
    person("Christoffer", "Cambronero", role = "aut",
           comment = c("Orbmac")),
    person("Pascal", "Pucholt", role = "aut",
           comment = c(ORCID = "0000-0003-3342-1373", "AskPascal")),
    person("Boxi", "Zhang", role = "aut",
           comment = c(ORCID = "0000-0001-7758-6204", "boxizhang")),
    person("Masoumeh", "Sheikhi", role = "aut",
           comment = c("MasoumehSheikhi")),
    person("Klev", "Diamanti", role = "aut",
           comment = c(ORCID = "0000-0002-4922-8415", "klevdiamanti")),
    person("Amrita", "Kar", role = "aut",
           comment = c("amrita-kar")),
    person("Lei", "Conze", role = "aut", 
            comment = c("leiliuC")),
    person("Kristyn", "Chin", role = "aut",
            comment = c("kristynchin-olink")),
    person("Danai", "Topouza", role = "aut",
            comment = c("dtopouza", ORCID = "0000-0002-6897-9281")),
    person("Stephen", "Pollo", role = "aut",
            comment = c("spollo-olprot", ORCID = "0000-0001-9252-4976")),
    person("Kang", "Dong", role = "aut",
            comment = c("KangD-dev", ORCID = "0000-0002-4567-5007")),
    person("Kristian", "Hodén", role = "ctb",
           comment = c(ORCID = "0000-0003-0354-0662", "kristianHoden")),
    person("Per", "Eriksson", role = "ctb",
           comment = c(ORCID = "0000-0001-7633-403X", "b_watcher")),
    person("Nicola", "Moloney", role = "ctb",
            comment = c(ORCID = "0000-0003-4967-3284")),
    person("Britta", "Lötstedt", role = "ctb",
            comment = c(ORCID = "0000-0003-3545-5489")),
    person("Emmett", "Sprecher", role = "ctb",
           comment = c(ORCID = "0000-0002-7710-695X")),
    person("Jessica", "Barbagallo", role = "ctb",
           comment = c("jbarbagallo")),
    person("Olof", "Mansson", role = "ctr",
           comment = c("olofmansson")),
    person("Ola", "Caster", role = "ctb",
           comment = c("OlaCaster")),
    person("Olink", role = c("cph", "fnd"))
  )
Description: Exemplifying analysis of large-scale protein data from the
        'Olink platform', primarily relative protein expression data
        that has been exported from 'Olink NPX Software', as well as
        QUANT data from 'Olink'. QUANT data is log-transformed.
        Materials focus on reading data, demonstrating data wrangling
        and quality control analysis, performing statistical analysis
        and generating figures to visualize the results of the
        statistical analysis. The goal of this package is to guide
        users extract biological insights from large-scale protein data
        run on the 'Olink platform'. More information on 'Olink' data
        can be found at <https://olink.com/>.
Contact: biostattools@olink.com
URL: https://olink.com/
        https://github.com/Olink-Proteomics/OlinkRPackage
License: AGPL (>= 3)
Encoding: UTF-8
Depends: R (>= 4.1.0)
Suggests: dplyr (>= 1.2.0), ggplot2, ggpubr, ggrepel, kableExtra,
        knitr, OlinkAnalyze, stringr, tidyr, umap
VignetteBuilder: knitr
Config/roxygen2/version: 8.1.0
NeedsCompilation: no
Packaged: 2026-10-09 23:21:20 UTC; root
Author: Kathleen Nevola [aut, cre] (ORCID:
        <https://orcid.org/0000-0002-5183-6444>, kathy-nevola),
        Marianne Sandin [aut] (ORCID:
        <https://orcid.org/0000-0001-6186-963X>, marisand), Jamey Guess
        [aut] (ORCID: <https://orcid.org/0000-0002-4017-0923>,
        jrguess), Simon Forsberg [aut] (ORCID:
        <https://orcid.org/0000-0002-7451-9222>, simfor), Christoffer
        Cambronero [aut] (Orbmac), Pascal Pucholt [aut] (ORCID:
        <https://orcid.org/0000-0003-3342-1373>, AskPascal), Boxi Zhang
        [aut] (ORCID: <https://orcid.org/0000-0001-7758-6204>,
        boxizhang), Masoumeh Sheikhi [aut] (MasoumehSheikhi), Klev
        Diamanti [aut] (ORCID: <https://orcid.org/0000-0002-4922-8415>,
        klevdiamanti), Amrita Kar [aut] (amrita-kar), Lei Conze [aut]
        (leiliuC), Kristyn Chin [aut] (kristynchin-olink), Danai
        Topouza [aut] (dtopouza, ORCID:
        <https://orcid.org/0000-0002-6897-9281>), Stephen Pollo [aut]
        (spollo-olprot, ORCID:
        <https://orcid.org/0000-0001-9252-4976>), Kang Dong [aut]
        (KangD-dev, ORCID: <https://orcid.org/0000-0002-4567-5007>),
        Kristian Hodén [ctb] (ORCID:
        <https://orcid.org/0000-0003-0354-0662>, kristianHoden), Per
        Eriksson [ctb] (ORCID: <https://orcid.org/0000-0001-7633-403X>,
        b_watcher), Nicola Moloney [ctb] (ORCID:
        <https://orcid.org/0000-0003-4967-3284>), Britta Lötstedt [ctb]
        (ORCID: <https://orcid.org/0000-0003-3545-5489>), Emmett
        Sprecher [ctb] (ORCID:
        <https://orcid.org/0000-0002-7710-695X>), Jessica Barbagallo
        [ctb] (jbarbagallo), Olof Mansson [ctr] (olofmansson), Ola
        Caster [ctb] (OlaCaster), Olink [cph, fnd]
Maintainer: Kathleen Nevola <biostattools@olink.com>
Repository: https://kathy-nevola.r-universe.dev
Date/Publication: 2026-10-09 21:02:50 UTC
RemoteUrl: https://github.com/cran/OlinkAnalyzeVignettes
RemoteRef: HEAD
RemoteSha: 194a0043f09c8b6ea3fd7d6a933482bfbe49c9df